Question
How do i tell blast to search multiple database using bio::tools::run::standaloneblast?
Answers
Put the names of the databases in a variable. like so:
my $dbs = '"/dba/BMC.fsa /dba/ALC.fsa /dba/HCC.fsa"';my @params = ( d      => "$dbs",program     => "BLASTN",_READMETHOD => "Blast",outfile     => "$dir/est.bls" );
my $factory =Bio::Tools::Run::StandAloneBlast->new(@params);my $seqio = Bio::SeqIO->new(-file=>'t/amino.fa',-format => 'Fasta' );my $seqobj = $seqio->next_seq();$factory->blastall($seqobj);   Your Comment




  • Contributors: *,


Search
Can you Answer!!
  • Q Identifying financial versus managerial accounting characteristics?
  • Q How are object properties assigned?
  • Q Carbon is added to steel-to increase hardness
  • Q A sales person multiplied a number and get the answer is 3,instead of that number divided by 3. what is the answer he actually has to get ?
  • Q Explain decimation & interpolation.
  • Q Who is the CEO of Syndicate Bank?
  • Q What would make the immediate delivery in cash sales?
  • Q A conversation between the judge and attorneys out of earshot of the jury is called a (A)Conference (B)Examination (C)Declaration (D)Sidebar consultation
  • Q Who tutored Thomas Aquinas?
  • Q Barren Island is a part of:
  • Q The chamber of princes was formed in: