Question
How do i parse the cds join or complement statements in genbank or embl files to get the sub-locations?

Answers

For example, how can I get the the coordinates 45 and 122 in join(45..122,233..267) :You could use primary_tag to find the CDS features and the Bio::Location::SplitLocationI object to get the coordinates:foreach my $feature ($seqobj->top_SeqFeatures){  if ( $feature->location->isa('Bio::Location::SplitLocationI') and $feature->primary_tag eq 'CDS' ) {     foreach my $location ( $feature->location->sub_Location ) {       print $location->start , ".." , $location->end, "n";     }  }}   Your Comment






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